WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040442 Gene Name  Cbr-acc-2
Sequence Name  ? CBG21746 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans acc-2. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21746.1 CBG21746.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21746 CBG21746   [unknown]

0 RNAi Result

33 Allele

Public Name
WBVar00130377
WBVar00130376
WBVar00130379
WBVar00130378
WBVar00130381
WBVar00130380
WBVar00130383
WBVar00130382
WBVar00130385
WBVar00130384
WBVar00130387
WBVar00130386
WBVar00130389
WBVar00130388
WBVar00130391
WBVar00130390
WBVar00130393
WBVar00130392
WBVar00130395
WBVar00130394
WBVar00130397
WBVar00130396
WBVar00130399
WBVar00130398
WBVar00130400
WBVar00130403
WBVar00130402
WBVar00130405
WBVar00130404
WBVar00130407

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-acc-2, GAATCTTCAAAATCTCTGAATTCGTGTGGAACGGGATGTTGGACACCAGAACGCATCGAT, WBGene00040442   Expr1062415 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in
  enables
  enables

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region