WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040612 Gene Name  Cbr-gpa-11
Sequence Name  ? CBG21947 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G-protein beta/gamma-subunit complex binding activity; GTPase activity; and guanyl nucleotide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Is an ortholog of C. elegans gpa-11. In C. elegans, gpa-11 is involved in determination of adult lifespan and serotonin receptor signaling pathway. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21947.1 CBG21947.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21947 CBG21947   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00032922
WBVar00032907
WBVar00032892
WBVar00032927
WBVar00032912
WBVar00032897
WBVar00032932
WBVar00032917
WBVar00032902
WBVar00032937

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gpa-11, TATTCAACACGAGAAACCCGTCTATTCCCATTATACCAATGCCACGGACACCCGAAATAT, WBGene00040612   Expr1054617 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region