WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040694 Gene Name  Cbr-tol-1
Sequence Name  ? CBG22058 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in signal transduction. Is an ortholog of C. elegans tol-1. In C. elegans, tol-1 is involved in defense response to Gram-negative bacterium and embryo development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22058.1 CBG22058.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22058 CBG22058   [unknown]

0 RNAi Result

35 Allele

Public Name
WBVar00015934
WBVar00015939
WBVar00045254
WBVar00033287
WBVar00015879
WBVar00015944
WBVar00045259
WBVar00015884
WBVar00015949
WBVar00045264
WBVar00015889
WBVar00015954
WBVar00045269
WBVar00015894
WBVar00130971
WBVar00015959
WBVar00130970
WBVar00130973
WBVar00130972
WBVar00045274
WBVar00130975
WBVar00130974
WBVar00015899
WBVar00015964
WBVar00130976
WBVar00015904
WBVar00015969
WBVar00015909
WBVar00015974
WBVar00015914

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tol-1, TCAGATGGACTCATCGCAATGCTTGATCTTGGTTCTAACCAAACACTTTTTGGAAAACGA, WBGene00040694   Expr1069975 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region