WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041020 Gene Name  CBG22467
Sequence Name  ? CBG22467 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable methyltransferase activity. Predicted to be involved in methylation and rRNA processing. Predicted to be located in nucleus. Is an ortholog of C. elegans H06I04.3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22467.1 CBG22467.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22467 CBG22467   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00131776
WBVar00020154
WBVar00020124
WBVar00020159
WBVar00020129
WBVar00020164
WBVar00020134
WBVar00020169
WBVar00020139
WBVar00020174
WBVar00020144
WBVar00020179
WBVar00020149
WBVar00051129

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG22467, GCGAATTCAATGCGAGACCGTCGAAGAAGGTGGCTGAGGCGAGGGCTAGGAAGCAAAAGA, WBGene00041020   Expr1059413 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region