WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041332 Gene Name  Cbr-nhr-102
Sequence Name  ? CBG22870 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-102. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22870.1 CBG22870.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22870 CBG22870   [unknown]

0 RNAi Result

32 Allele

Public Name
WBVar00037564
WBVar00037569
WBVar00037574
WBVar00037579
WBVar00037584
WBVar00037589
WBVar00132512
WBVar00132513
WBVar00132511
WBVar00132516
WBVar00132517
WBVar00132514
WBVar00132515
WBVar00132520
WBVar00132521
WBVar00132518
WBVar00132519
WBVar00132524
WBVar00132525
WBVar00132522
WBVar00132523
WBVar00132528
WBVar00132529
WBVar00132526
WBVar00037549
WBVar00132527
WBVar00132532
WBVar00132533
WBVar00132530
WBVar00132531

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nhr-102, TATTTAAAAGAGGAAATGAGATCGAATTACGCTGGTCGTTTGGTTCGGCTGATGAGTGTT, WBGene00041332   Expr1053481 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region