WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041414 Gene Name  Cbr-dcr-1
Sequence Name  ? CBG22974 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable organic cyclic compound binding activity and ribonuclease III activity. Predicted to be involved in RNA processing. Is an ortholog of C. elegans dcr-1. In C. elegans, dcr-1 is involved in several processes, including nucleobase-containing compound catabolic process; olfactory learning; and regulatory ncRNA-mediated gene silencing. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22974.1 CBG22974.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22974 CBG22974   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dcr-1, ATCCGCACTCGTCAATAACACGATTTTCGCGTCGTTGGCTGTGAAGTTCGAGTTTCAGAA, WBGene00041414   Expr1062924 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG22975, AAAGAGCGGTTAGAAGCAATGGAGATGTCTGAGGAGCGAGAGAAGCCACGGAGAATTGAG, WBGene00041415   Expr1052001 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region