WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042331 Gene Name  CBG24154
Sequence Name  ? CBG24154 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 4 iron, 4 sulfur cluster binding activity and oxidoreductase activity, acting on NAD(P)H. Predicted to be located in membrane. Is an ortholog of C. elegans T20H4.5. In C. elegans, T20H4.5 is involved in mitochondrial electron transport, NADH to ubiquinone and response to xenobiotic stimulus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG24154.1 CBG24154.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG24154 CBG24154   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00133902
WBVar00133903
WBVar00042144
WBVar00013604
WBVar00133900
WBVar00133901
WBVar00013609

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG24154, CCAGTTGACGCTATTGTCGAAGGACCAAATTTCGAGTATTCTACTGAAACTCACGAAGAA, WBGene00042331   Expr1065452 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-adr-2, CTATGTCTTGCTCAGATAAATTATTGAGAGCCAACGTGTTAGGAGTCCAAGGAGCACTGC, WBGene00042332   Expr1050886 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region