WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042654 Gene Name  Cbr-unc-62
Sequence Name  ? CBG24578 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans unc-62. In C. elegans, unc-62 is involved in cell fate specification; muscle cell differentiation; and regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG24578g.1 CBG24578g.1   [unknown]
Transcript:CBG24578f.1 CBG24578f.1   [unknown]
Transcript:CBG24578e.1 CBG24578e.1   [unknown]
Transcript:CBG24578d.1 CBG24578d.1   [unknown]
Transcript:CBG24578c.1 CBG24578c.1   [unknown]
Transcript:CBG24578b.1 CBG24578b.1   [unknown]
Transcript:CBG24578a.1 CBG24578a.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG24578a CBG24578a   [unknown]
CDS:CBG24578b CBG24578b   [unknown]
CDS:CBG24578c CBG24578c   [unknown]
CDS:CBG24578d CBG24578d   [unknown]
CDS:CBG24578e CBG24578e   [unknown]
CDS:CBG24578f CBG24578f   [unknown]
CDS:CBG24578g CBG24578g   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00140313
WBVar00140316
WBVar00140317
WBVar00140314
WBVar00140315

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-62, GCGCCCGCTGTCGACGCCATCTCCCAACAATGGATTGATCTCTCGGCTCCACATGAATAA, WBGene00042654   Expr1051876 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region