WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042676 Gene Name  Cbr-ced-9
Sequence Name  ? CBG24606 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulation of apoptotic process. Is an ortholog of C. elegans ced-9. In C. elegans, ced-9 is involved in several processes, including mitophagy; positive regulation of reproductive process; and regulation of cellular component organization. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG24606.1 CBG24606.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG24606 CBG24606   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00134340
WBVar00134341
WBVar00134342
WBVar00036039

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ced-9, CAAGTGCGAAACCTTCTTATGTACACATCGCTGTTCATCAAAACGAGAATCCGACAGTCG, WBGene00042676   Expr1050458 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region