WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00056053 Gene Name  Cre-ndc-80
Sequence Name  ? CRE28570 Organism  Caenorhabditis remanei
Automated Description  Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore. Predicted to be part of Ndc80 complex. Is an ortholog of C. elegans ndc-80. In C. elegans, ndc-80 is involved in several processes, including chromosome organization; gonad morphogenesis; and positive regulation of kinetochore assembly. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis remanei 31234

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CRE28570.1 CRE28570.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CRE28570 CRE28570   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cre-ndc-80, TTGGGAGATTCTAATTGGTTCTTGGTTACCGGAGATCAATCGTCAGTTGCATCAAAGAAA, WBGene00056053   Expr1095381 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region