WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00063875 Gene Name  Cre-bre-1
Sequence Name  ? CRE25776 Organism  Caenorhabditis remanei
Automated Description  Predicted to enable GDP-mannose 4,6-dehydratase activity. Predicted to be involved in GDP-mannose metabolic process. Is an ortholog of C. elegans bre-1. In C. elegans, bre-1 is involved in GDP-L-fucose biosynthetic process; GDP-mannose metabolic process; and response to toxic substance. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis remanei 31234

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CRE25776.1 CRE25776.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CRE25776 CRE25776   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cre-bre-1, GAACTCGTCAAAGAGATGGTTGCCAGTGACATTCTCCTTATGAAGTCCAATCCAATGGCA, WBGene00063875   Expr1096447 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CRE02702, TTTTGGGAAATCCAGAAAAGGCGAAGAAGACTCTCGGATGGGAAGCGAAGGTTACTGTTC, WBGene00084107   Expr1096501 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region