WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00103845 Gene Name  PPA14291
Sequence Name  ? PPA14291 Organism  Pristionchus pacificus
Automated Description  Predicted to enable several functions, including DNA-binding transcription factor activity; metal ion binding activity; and sodium channel activity. Predicted to be involved in regulation of DNA-templated transcription and sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans egas-1; egas-2; and egas-3. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA14291.1 PPA14291.1   [unknown]
 

Other

0 CDSs

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Yeast culture: C.albidus Transcripts that showed significantly decreased expression after fed with yeast culture C.albidus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.albidus_vs_OP50_downregulated

0 Expression Patterns

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region