WormMine: Gene WBGene00113222

• WormBase Gene ID: WBGene00113222
• Gene Name: Ppa-msh-2
• Sequence Name: PPA23668
• Organism: Pristionchus pacificus
• Automated Description: Predicted to enable ATP binding activity and mismatched DNA binding activity. Predicted to be involved in mismatch repair. Is an ortholog of C. elegans msh-2. In C. elegans, msh-2 is involved in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; maintenance of DNA repeat elements; and mismatch repair.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Pristionchus pacificus
• Taxon Id: 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:PPA23668.1	PPA23668.1		[unknown]

Other

0 CDSs

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides.	The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid).	WBPaper00041472:Phosphorylated_protein
Yeast culture: C.albidus	Transcripts that showed significantly increased expression after fed with yeast culture C.albidus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.albidus_vs_OP50_upregulated

0 Expression Patterns

3 GO Annotation

0 Homologues

0 Locations

3 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

• Name: gene

0 Strains

0 Upstream Intergenic Region