WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00120450 Gene Name  Cjp-let-99
Sequence Name  ? CJA01246 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable palmitoyltransferase activity. Predicted to be involved in intracellular signal transduction. Is an ortholog of C. elegans let-99. In C. elegans, let-99 is involved in establishment of mitotic spindle orientation. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA01246c.1 CJA01246c.1   [unknown]
Transcript:CJA01246b.1 CJA01246b.1   [unknown]
Transcript:CJA01246a.1 CJA01246a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA01246c CJA01246c   [unknown]
CDS:CJA01246b CJA01246b   [unknown]
CDS:CJA01246a CJA01246a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-let-99, AAGTAGAAGACGAGCGCTGTCGCCATATGACAATAGATTCCGACTAGATATTCAAGGTGA, WBGene00120450   Expr1081013 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA23313, GCTATTTCTCACTGGACTCCTACAAATTCTCATTCTTTTATTTTTGGGCACTTATATTTC, WBGene00178885   Expr1081877 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region