WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00122482 Gene Name  Cjp-haf-9
Sequence Name  ? CJA03278 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable ATP binding activity; ATP hydrolysis activity; and transmembrane transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans haf-9. In C. elegans, haf-9 is involved in lysosomal transport and regulatory ncRNA-mediated post-transcriptional gene silencing. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA03278.1 CJA03278.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA03278 CJA03278   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-haf-9, AGCTCTCGTTCGTCAGCCAGTCGTTCTCCTTCTTGATGAAGCCACTTCTGCACTCGATGC, WBGene00122482   Expr1075742 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  located_in
  involved_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region