WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00122956 Gene Name  Cjp-npp-3
Sequence Name  ? CJA03752 Organism  Caenorhabditis japonica
Automated Description  Predicted to be part of nuclear pore. Is an ortholog of C. elegans npp-3. In C. elegans, npp-3 is involved in several processes, including establishment of localization in cell; positive regulation of nematode male tail tip morphogenesis; and regulation of cell cycle. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA03752a.1 CJA03752a.1   [unknown]
Transcript:CJA03752c.1 CJA03752c.1   [unknown]
Transcript:CJA03752b.1 CJA03752b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA03752b CJA03752b   [unknown]
CDS:CJA03752a CJA03752a   [unknown]
CDS:CJA03752c CJA03752c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA03752, GCAACTACGAGTCGGCGCTTTCAAATTATGAGAATTTCCTGAGAAGCTTTGTGGATTTGT, WBGene00122956   Expr1092040 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  part_of

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region