WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00124615 Gene Name  CJA05411
Sequence Name  ? CJA05411 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable actin binding activity. Predicted to be involved in actin filament depolymerization. Predicted to be located in actin cytoskeleton. Is an ortholog of C. elegans unc-60. In C. elegans, unc-60 is involved in several processes, including actin filament-based process; embryo development; and positive regulation of actin filament polymerization. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA05411b.1 CJA05411b.1   [unknown]
Transcript:CJA05411a.1 CJA05411a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA05411a CJA05411a   [unknown]
CDS:CJA05411b CJA05411b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA05411, GAAGTTACTGTTCAGAGACAGGGAGCTGAAGGAGCCAGTACTCTCAACAAGGTTATCTTC, WBGene00124615   Expr1071861 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region