WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00126794 Gene Name  Cjp-scp-1
Sequence Name  ? CJA07590 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable sterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Is an ortholog of C. elegans scp-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA07590a.1 CJA07590a.1   [unknown]
Transcript:CJA07590c.1 CJA07590c.1   [unknown]
Transcript:CJA07590b.1 CJA07590b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA07590c CJA07590c   [unknown]
CDS:CJA07590b CJA07590b   [unknown]
CDS:CJA07590a CJA07590a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-scp-1, AAGTCATGTATTTCATCACACGGACACGAATTGCTCAACGAACTATTCTAGTGGTTTTTG, WBGene00126794   Expr1080678 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  located_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  located_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region