WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00130000 Gene Name  Cjp-sur-6
Sequence Name  ? CJA10796 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable protein phosphatase regulator activity. Predicted to be part of protein phosphatase type 2A complex. Is an ortholog of C. elegans sur-6. In C. elegans, sur-6 is involved in embryo development; nematode larval development; and positive regulation of vulval development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA10796.2 CJA10796.2   [unknown]
Transcript:CJA10796.1 CJA10796.1   [unknown]
Transcript:CJA10796.4 CJA10796.4   [unknown]
Transcript:CJA10796.3 CJA10796.3   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA10796 CJA10796   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-sur-6, AAATCAGCAAGGAGCCGATGCGAAGACGTGGGAGGCGAGACCACAAGAGCCACATTCGAA, WBGene00130000   Expr1085058 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  part_of
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  part_of
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region