WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00130529 Gene Name  Cjp-lst-4
Sequence Name  ? CJA11325 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in mitotic cell cycle and protein transport. Is an ortholog of C. elegans lst-4. In C. elegans, lst-4 is involved in execution phase of apoptosis and phagosome-lysosome fusion involved in apoptotic cell clearance. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA11325b.1 CJA11325b.1   [unknown]
Transcript:CJA11325a.1 CJA11325a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA11325a CJA11325a   [unknown]
CDS:CJA11325b CJA11325b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-lst-4, GAGGGCAGGCTCTCACCTGCCGAAGCTGAAAAGATGAAACAGCGCATTGATGTGATGAGC, WBGene00130529   Expr1081716 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region