WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00131312 Gene Name  Cjp-shk-1
Sequence Name  ? CJA12108 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans shk-1. In C. elegans, shk-1 is involved in potassium ion transmembrane transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA12108b.1 CJA12108b.1   [unknown]
Transcript:CJA12108a.1 CJA12108a.1   [unknown]
Transcript:CJA12108a.2 CJA12108a.2   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA12108b CJA12108b   [unknown]
CDS:CJA12108a CJA12108a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA08885, CAAACACTTTTACCGTCAAGAAAACCGTCTCGCATCAATGAAGTCGACCGCGAAGGGAGA, WBGene00128091   Expr1089160 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-shk-1, CAGAGAAAAATTTGGGAGCTTATGGAATTCCCGGATAGCTCACTTTCCGCCAGAATCATC, WBGene00131312   Expr1076965 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA22467, TTCGCTTCTGGAATGTATTTTGCAGAGCAGGGAGAGCCAAACTCAAAGTTCACTTCGATT, WBGene00178039   Expr1091585 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables
  involved_in
  involved_in
  located_in
  involved_in
  part_of

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables
  involved_in
  involved_in
  located_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region