WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00133370 Gene Name  Cjp-cdh-12
Sequence Name  ? CJA14166 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of C. elegans cdh-12. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA14166e.1 CJA14166e.1   [unknown]
Transcript:CJA14166c.1 CJA14166c.1   [unknown]
Transcript:CJA14166d.1 CJA14166d.1   [unknown]
Transcript:CJA14166a.1 CJA14166a.1   [unknown]
Transcript:CJA14166b.1 CJA14166b.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA14166e CJA14166e   [unknown]
CDS:CJA14166d CJA14166d   [unknown]
CDS:CJA14166a CJA14166a   [unknown]
CDS:CJA14166c CJA14166c   [unknown]
CDS:CJA14166b CJA14166b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA14166, AAGAGACGTTCAAGAAGCAATCCTATTTCCATGGAAGGCTCTTATATGGTCAACTCGGTG, WBGene00133370   Expr1070472 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA09344, CGGCATCATCAAAATCAACGAGATGGGCGAGATATTGGCGGGCAAGAACCTCAATCGTCA, WBGene00128548   Expr1084998 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-cdh-12, ATATGAAACGACGAGTGAAGACGAGCATGAAGATTGATATAGTGAACTCGGAGACTTTGA, WBGene00125633   Expr1076191 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region