WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00133936 Gene Name  Cjp-nurf-1
Sequence Name  ? CJA14732 Organism  Caenorhabditis japonica
Automated Description  Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of NURF complex. Is an ortholog of C. elegans nurf-1. In C. elegans, nurf-1 is involved in positive regulation of transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA14732a.1 CJA14732a.1   [unknown]
Transcript:CJA14732b.1 CJA14732b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA14732a CJA14732a   [unknown]
CDS:CJA14732b CJA14732b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-nurf-1, TTTATTGATTAACAAATGCTACTCGCCGAGTTGTCAAACTCGAGATTCCGCCATTCAGCA, WBGene00133936   Expr1087278 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region