WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00136216 Gene Name  Cjp-nmr-1
Sequence Name  ? CJA17013 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable DNA binding activity; ligand-gated monoatomic ion channel activity; and signaling receptor activity. Predicted to be involved in DNA integration; DNA transposition; and monoatomic ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans nmr-1. In C. elegans, nmr-1 is involved in locomotory behavior and regulation of forward locomotion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA17013b.1 CJA17013b.1   [unknown]
Transcript:CJA17013a.1 CJA17013a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA17013a CJA17013a   [unknown]
CDS:CJA17013b CJA17013b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-nmr-1, AACTTGGACCAGAAATGGATCGATCGAGGTGGGCCAAACTGCGTTGTGGAGGCACACAAA, WBGene00136216   Expr1090997 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  involved_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region