WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00176914 Gene Name  CJA21342
Sequence Name  ? CJA21342 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA topological change and protein secretion by the type IV secretion system. Predicted to be located in outer membrane. Predicted to be part of type IV secretion system complex. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA21342a.1 CJA21342a.1   [unknown]
Transcript:CJA21342c.1 CJA21342c.1   [unknown]
Transcript:CJA21342b.1 CJA21342b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA21342a CJA21342a   [unknown]
CDS:CJA21342c CJA21342c   [unknown]
CDS:CJA21342b CJA21342b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

5 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA23586, GTCGCTCTACAACACGGGCAAATTCGATAACGGCATCGCCAACGGCTACGTAAGCAAGGT, WBGene00179158   Expr1071084 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA20499, GAAGAGAAAATGAATCGCTCGCAAGCGGCTACCAACCGGGAAGTGCCGGTTTCAAAGACG, WBGene00176071   Expr1073473 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA21342, ACCTGCAAGCGCAATTACAAGACGGGGCCGGATGGCAAGCCCGTGATGAACGACAAGTAA, WBGene00176914   Expr1072922 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA19625, GGAAACGGGAAGAGCAAAGTCGAGAAGGACCAGGAGGCGGATGCCAGCAAAACGGCTCGT, WBGene00175196   Expr1071405 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA26080, TGAAAGCCTCAAAGCAGAGAATGCTGCTTTCCCCTTGCGAATGACGCAGGCGATTAACGC, WBGene00181652   Expr1082323 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

11 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  involved_in
  part_of
  located_in

0 Homologues

0 Locations

11 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  involved_in
  part_of
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region