WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00184484 Gene Name  CJA28910
Sequence Name  ? CJA28910 Organism  Caenorhabditis japonica
Automated Description  Predicted to be involved in defense response to other organism. Is an ortholog of C. elegans abf-2. In C. elegans, abf-2 is involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA28910a.1 CJA28910a.1   [unknown]
Transcript:CJA28910b.1 CJA28910b.1   [unknown]
Transcript:CJA28910c.1 CJA28910c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA28910b CJA28910b   [unknown]
CDS:CJA28910c CJA28910c   [unknown]
CDS:CJA28910a CJA28910a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA19834, GATGTGCCAATGGTGGCGGTAACATTCCGTTGGACGCGATTATCAAGAAAGGACGATAAT, WBGene00175405   Expr1072121 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region