Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C32C4.16.1 | C32C4.16.1 |
458
 |
V: 10647561-10648114 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:C32C4.16 | C32C4.16 |
135
|
V: 10647775-10647810 |
16 Allele
| Public Name |
|---|
| gk963301 |
| gk964451 |
| gk964452 |
| gk963495 |
| gk963496 |
| WBVar02060821 |
| gk964351 |
| gk964304 |
| WBVar01865052 |
| WBVar01974648 |
| gk960755 |
| gk245849 |
| gk245848 |
| ot71 |
| gk745966 |
| gk872673 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00206383 | 10647561 | 10648114 | 1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_10648115..10648445 | 331 | V: 10648115-10648445 | Caenorhabditis elegans |
7 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_upregulated_neuron | |
| Transcripts that showed significantly increased expression in spr-1(ok2144) comparing to in N2. | DESeq2, fold change > 2, p-value < 0.01. | WBPaper00061203:spr-1(ok2144)_upregulated | |
| Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron | |
| Transcripts that showed significantly increased expression in xpf-1(tm2842) comparing to in N2 animals. | DESeq2 1.14.1, fold change > 2, FDR < 0.01. | WBPaper00062497:xpf-1(tm2842)_upregulated | |
| Transcripts that showed significantly decreased expression in animals with germline-specific inx-14(RNAi) comparing to in aniamls fed with control vector, both exposed to PA14 infection. | DESeq2. Differentially-expressed genes (DEG) were identified based on two criteria: FDR (False discovery rateusing Benjamini-Hochberg adjusted p-values) < 0.01 and absolute value of log2(Fold Change) > 1. | WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14 | |
| Transcripts that showed significantly increased expression in prx-5(RNAi) animals. | Fold change > 2, p-value < 0.05. | WBPaper00060911:prx-5(RNAi)_upregulated_mRNA | |
| Transcripts that showed significantly altered expression after 24 hour exposure to stavudine (FLT) starting at L1 lava stage. | DESeq | WBPaper00053302:alovudine_72h_regulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1145682 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_10647305..10647560 | 256 | V: 10647305-10647560 | Caenorhabditis elegans |
