WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00210973 Gene Name  Cjp-pptr-1.9
Sequence Name  ? CJA35126 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable protein phosphatase regulator activity. Predicted to be involved in signal transduction. Predicted to be part of protein phosphatase type 2A complex. Is an ortholog of C. elegans pptr-1. In C. elegans, pptr-1 is involved in several processes, including P granule assembly; determination of adult lifespan; and negative regulation of insulin receptor signaling pathway. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA35126b.1 CJA35126b.1   [unknown]
Transcript:CJA35126a.1 CJA35126a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA35126b CJA35126b   [unknown]
CDS:CJA35126a CJA35126a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA13344, GATTTGCTCTTCCGTTAAAGCAAGAGCACAAGATGTTCCTCGTCAAAGTACTCCTTCCAC, WBGene00132548   Expr1084149 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  part_of
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  part_of
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region