WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00212636 Gene Name  Cjp-rict-1.1
Sequence Name  ? CJA36789 Organism  Caenorhabditis japonica
Automated Description  Predicted to be involved in TOR signaling. Predicted to be part of TORC2 complex. Is an ortholog of C. elegans rict-1. In C. elegans, rict-1 is involved in mesendoderm development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA36789b.1 CJA36789b.1   [unknown]
Transcript:CJA36789a.1 CJA36789a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA36789a CJA36789a   [unknown]
CDS:CJA36789b CJA36789b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA07023, AAAGTCATGCGATTGCTGCTATCGACGGGTCTTTTGATATTAATACTATGGAGCAGTACA, WBGene00126227   Expr1084182 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA23060, ACTGACGATTACGACTATTCACTTCAAATGGCAAGAGACACTTTTGACGAAGAAGAGGAG, WBGene00178632   Expr1077223 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  part_of
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  part_of
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region