Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F46B3.23.1 | F46B3.23.1 |
252
 |
V: 20606423-20606717 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F46B3.23 | F46B3.23 |
237
|
V: 20606427-20606575 |
22 Allele
| Public Name |
|---|
| gk963271 |
| WBVar02124844 |
| gk964176 |
| gk962705 |
| gk963489 |
| gk963304 |
| WBVar02122714 |
| WBVar02124642 |
| gk963809 |
| WBVar02124290 |
| WBVar01978717 |
| gk950292 |
| WBVar00229237 |
| WBVar00073553 |
| WBVar00073555 |
| WBVar00073554 |
| WBVar02105835 |
| WBVar01599690 |
| WBVar01599691 |
| gk767800 |
| ttTi11392 |
| gk908822 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00195243 | 20606423 | 20606717 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
7 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_upregulated_neuron | |
| Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. | DESEQ2, fold change > 2 and FDR < 0.01. | WBPaper00062103:neuron_enriched | |
| Transcripts that showed significantly increased expression in 1-day post L4 adult hermaphrodite npr-8(ok1439) animals grown at 20C, comparing to in N2 animals. | CuffDiff, fold change > 2. | WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C | |
| Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage. | Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00065158:AFD_enriched |
| Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum | Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. | GFold3, logFC < -1 or > 1. | WBPaper00066703:L.plantarum-pdxH_upregulated |
| Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage. | Transcripts that showed significantly decreased expression in AFD neurons at lin-15(n765ts); oyIs95 animals shifted from 20C to 25C for 16 hours at L4 larva stage, comparing to animals shifted from 20C to 15C for 16 hours at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00065158:25C_vs_15C_downregulated_AFD |
| Transcripts that showed significantly increased expression in AFD neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis. | Fold change >= 4. | WBPaper00050344:AFD-neuron_enriched |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1151320 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 | |||
| Expr2003773 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_20606718..20607776 | 1059 | V: 20606718-20607776 | Caenorhabditis elegans |
