WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222077 Gene Name  Bma-spk-1
Sequence Name  ? Bm1816 Organism  Brugia malayi
Automated Description  Predicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans spk-1. In C. elegans, spk-1 is involved in embryo development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm1816a.1 Bm1816a.1   [unknown]
Transcript:Bm1816g.1 Bm1816g.1   [unknown]
Transcript:Bm1816f.1 Bm1816f.1   [unknown]
Transcript:Bm1816e.1 Bm1816e.1   [unknown]
Transcript:Bm1816d.1 Bm1816d.1   [unknown]
Transcript:Bm1816c.1 Bm1816c.1   [unknown]
Transcript:Bm1816b.1 Bm1816b.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm1816a Bm1816a   [unknown]
CDS:Bm1816b Bm1816b   [unknown]
CDS:Bm1816e Bm1816e   [unknown]
CDS:Bm1816f Bm1816f   [unknown]
CDS:Bm1816c Bm1816c   [unknown]
CDS:Bm1816d Bm1816d   [unknown]
CDS:Bm1816g Bm1816g   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly higher expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Upregulated
  Transcripts that showed significantly decreased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F120_vs_F30

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region