WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222184 Gene Name  Bma-tsp-17
Sequence Name  ? Bm1923 Organism  Brugia malayi
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans tsp-17. In C. elegans, tsp-17 is involved in cellular response to paraquat; negative regulation of response to oxidative stress; and regulation of dopamine uptake involved in synaptic transmission. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

10 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm1923d.2 Bm1923d.2   [unknown]
Transcript:Bm1923d.3 Bm1923d.3   [unknown]
Transcript:Bm1923d.1 Bm1923d.1   [unknown]
Transcript:Bm1923c.1 Bm1923c.1   [unknown]
Transcript:Bm1923b.1 Bm1923b.1   [unknown]
Transcript:Bm1923a.1 Bm1923a.1   [unknown]
Transcript:Bm1923h.1 Bm1923h.1   [unknown]
Transcript:Bm1923g.1 Bm1923g.1   [unknown]
Transcript:Bm1923f.1 Bm1923f.1   [unknown]
Transcript:Bm1923e.1 Bm1923e.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm1923f Bm1923f   [unknown]
CDS:Bm1923g Bm1923g   [unknown]
CDS:Bm1923d Bm1923d   [unknown]
CDS:Bm1923e Bm1923e   [unknown]
CDS:Bm1923h Bm1923h   [unknown]
CDS:Bm1923b Bm1923b   [unknown]
CDS:Bm1923c Bm1923c   [unknown]
CDS:Bm1923a Bm1923a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly decreased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F120_vs_F30

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region