WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222973 Gene Name  Bma-acn-1
Sequence Name  ? Bm2712 Organism  Brugia malayi
Automated Description  Predicted to enable metallopeptidase activity and peptidyl-dipeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Is an ortholog of C. elegans acn-1. In C. elegans, acn-1 is involved in ecdysis, collagen and cuticulin-based cuticle and nematode male tail tip morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm2712a.1 Bm2712a.1   [unknown]
Transcript:Bm2712b.1 Bm2712b.1   [unknown]
Transcript:Bm2712c.1 Bm2712c.1   [unknown]
Transcript:Bm2712d.1 Bm2712d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm2712d Bm2712d   [unknown]
CDS:Bm2712c Bm2712c   [unknown]
CDS:Bm2712b Bm2712b   [unknown]
CDS:Bm2712a Bm2712a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly lower expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Downregulated
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M42
  Transcripts that showed significantly lower expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Downregulated

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  located_in
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region