WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223168 Gene Name  Bm2907
Sequence Name  ? Bm2907 Organism  Brugia malayi
Automated Description  Predicted to enable GDP-mannose 4,6-dehydratase activity. Predicted to be involved in GDP-mannose metabolic process. Is an ortholog of C. elegans bre-1 and gmd-2. In C. elegans, bre-1 is involved in GDP-L-fucose biosynthetic process; GDP-mannose metabolic process; and response to toxic substance. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm2907a.1 Bm2907a.1   [unknown]
Transcript:Bm2907c.1 Bm2907c.1   [unknown]
Transcript:Bm2907b.1 Bm2907b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm2907a Bm2907a   [unknown]
CDS:Bm2907b Bm2907b   [unknown]
CDS:Bm2907c Bm2907c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F30

0 Expression Patterns

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region