WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223238 Gene Name  Bma-abcx-1
Sequence Name  ? Bm2977 Organism  Brugia malayi
Automated Description  Predicted to enable ABC-type transporter activity. Predicted to be located in membrane. Is an ortholog of C. elegans abcx-1. In C. elegans, abcx-1 is involved in positive regulation of nematode male tail tip morphogenesis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm2977a.1 Bm2977a.1   [unknown]
Transcript:Bm2977b.1 Bm2977b.1   [unknown]
Transcript:Bm2977c.1 Bm2977c.1   [unknown]
Transcript:Bm2977d.1 Bm2977d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm2977b Bm2977b   [unknown]
CDS:Bm2977c Bm2977c   [unknown]
CDS:Bm2977d Bm2977d   [unknown]
CDS:Bm2977a Bm2977a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Proteins that are enriched in digestive tract of adult female Brugia malayi. Protein quantitation was determined by normalized spectral abundance.Proteins with NSAF enrichment values of 2 or greater were were considered enriched within that fraction. WBPaper00048706:digestive-tract_enriched

0 Expression Patterns

2 GO Annotation

Annotation Extension Qualifier
  located_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region