WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223720 Gene Name  Bm3459
Sequence Name  ? Bm3459 Organism  Brugia malayi
Automated Description  Predicted to enable poly(ADP-ribose) glycohydrolase activity. Predicted to be involved in carbohydrate metabolic process and regulation of DNA repair. Is an ortholog of C. elegans parg-1 and parg-2. In C. elegans, parg-1 is involved in nucleotide-sugar metabolic process and response to gamma radiation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm3459a.1 Bm3459a.1   [unknown]
Transcript:Bm3459b.1 Bm3459b.1   [unknown]
Transcript:Bm3459c.1 Bm3459c.1   [unknown]
Transcript:Bm3459d.1 Bm3459d.1   [unknown]
Transcript:Bm3459e.1 Bm3459e.1   [unknown]
Transcript:Bm3459f.1 Bm3459f.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm3459d Bm3459d   [unknown]
CDS:Bm3459e Bm3459e   [unknown]
CDS:Bm3459f Bm3459f   [unknown]
CDS:Bm3459a Bm3459a   [unknown]
CDS:Bm3459b Bm3459b   [unknown]
CDS:Bm3459c Bm3459c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_M30

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region