WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223765 Gene Name  Bm3504
Sequence Name  ? Bm3504 Organism  Brugia malayi
Automated Description  Predicted to enable microtubule plus end polymerase and microtubule plus-end binding activity. Predicted to be involved in establishment or maintenance of microtubule cytoskeleton polarity; microtubule polymerization; and spindle organization. Is an ortholog of C. elegans zyg-9. In C. elegans, zyg-9 is involved in embryo development; meiotic spindle organization; and spindle elongation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm3504a.1 Bm3504a.1   [unknown]
Transcript:Bm3504b.1 Bm3504b.1   [unknown]
Transcript:Bm3504c.1 Bm3504c.1   [unknown]
Transcript:Bm3504d.1 Bm3504d.1   [unknown]
Transcript:Bm3504e.1 Bm3504e.1   [unknown]
Transcript:Bm3504f.1 Bm3504f.1   [unknown]
Transcript:Bm3504g.1 Bm3504g.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm3504e Bm3504e   [unknown]
CDS:Bm3504f Bm3504f   [unknown]
CDS:Bm3504g Bm3504g   [unknown]
CDS:Bm3504a Bm3504a   [unknown]
CDS:Bm3504b Bm3504b   [unknown]
CDS:Bm3504c Bm3504c   [unknown]
CDS:Bm3504d Bm3504d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M42
  Transcripts that showed significantly decreased expression after 5 days of 1uM ivermectin exposure. Differential gene expression analysis between time points and drug concentrations was realized in edgeR (version 3.10.5) through the web interface provided by NetworkAnalyst. Significance was set as an experiment-wide false discovery rate (FDR) <0.20 (after the Benjamini-Hochberg method). WBPaper00049974:ivermectin_1uM_5-day_downregulated
  Transcripts that showed significantly decreased expression after 48 hours of 300nM ivermectin exposure. Differential gene expression analysis between time points and drug concentrations was realized in edgeR (version 3.10.5) through the web interface provided by NetworkAnalyst. Significance was set as an experiment-wide false discovery rate (FDR) <0.20 (after the Benjamini-Hochberg method). WBPaper00049974:ivermectin_300nM_48h_downregulated

0 Expression Patterns

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region