WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00223902 Gene Name  Bm3641
Sequence Name  ? Bm3641 Organism  Brugia malayi
Automated Description  Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of NURF complex. Is an ortholog of C. elegans baz-2 and nurf-1. In C. elegans, baz-2 is involved in epigenetic regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

9 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm3641a.1 Bm3641a.1   [unknown]
Transcript:Bm3641b.1 Bm3641b.1   [unknown]
Transcript:Bm3641c.1 Bm3641c.1   [unknown]
Transcript:Bm3641d.1 Bm3641d.1   [unknown]
Transcript:Bm3641e.1 Bm3641e.1   [unknown]
Transcript:Bm3641g.1 Bm3641g.1   [unknown]
Transcript:Bm3641f.1 Bm3641f.1   [unknown]
Transcript:Bm3641h.1 Bm3641h.1   [unknown]
Transcript:Bm3641i.1 Bm3641i.1   [unknown]
 

Other

9 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm3641b Bm3641b   [unknown]
CDS:Bm3641a Bm3641a   [unknown]
CDS:Bm3641h Bm3641h   [unknown]
CDS:Bm3641g Bm3641g   [unknown]
CDS:Bm3641i Bm3641i   [unknown]
CDS:Bm3641d Bm3641d   [unknown]
CDS:Bm3641c Bm3641c   [unknown]
CDS:Bm3641f Bm3641f   [unknown]
CDS:Bm3641e Bm3641e   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

9 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly higher expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Upregulated
  Transcripts that showed significantly higher expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Upregulated
  Transcripts that showed significantly decreased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F120_vs_F30
  Transcripts that showed significantly higher expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Upregulated
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M42
  Proteins that are enriched in productive tract of adult female Brugia malayi. Protein quantitation was determined by normalized spectral abundance.Proteins with NSAF enrichment values of 2 or greater were were considered enriched within that fraction. WBPaper00048706:productive-tract_enriched
  Proteins secreted by B.malayi at L3 larva stage, according to LC-MS-MS. N.A. WBPaper00050454:Secretome_protein
  Transcripts that showed significantly decreased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M30_vs_L4

0 Expression Patterns

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region