WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00225693 Gene Name  Bma-dpy-31
Sequence Name  ? Bm5432 Organism  Brugia malayi
Automated Description  Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to be involved in molting cycle and proteolysis. Expressed in excretory duct; intestine; and pharyngeal gland cell. Is an ortholog of C. elegans dpy-31. In C. elegans, dpy-31 is involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm5432b.1 Bm5432b.1   [unknown]
Transcript:Bm5432a.1 Bm5432a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm5432a Bm5432a   [unknown]
CDS:Bm5432b Bm5432b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly decreased expression in male B. malayi 42 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M42_vs_M30
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M42
  Transcripts that showed significantly increased expression in male B. malayi 30 days after infecting gerbils, comparing to female B. malayi 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M30_vs_F30
  Transcripts that showed significantly increased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M30_vs_L4
  Time-course transcript abundance profiles. P116, k-means clusters of Brugia malayi during development in Aedes aegypti LVP between day 1 and 8 post infection; H114, k-means clusters of Ae. aegypti LVP infected with B. malayi between day 0 and 8 post infection; and HR14, host response profile comparing infected vs. uninfected A. aegypti LVP. Non-flat profiles (p < 0.01 and maximum fold-difference among time points > 2) were grouped into common temporal patterns using k-means clustering. WBPaper00045439:BM_Cluster_P9

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr12862 Expression of B. malayi DPY-31 is predominantly restricted to the gut cells of C. elegans. This expression pattern was consistent throughout all life-cycle stages, including embryos, larvae and adults. B. malayi dpy-31 promoter/reporter was also expressed in the gland cells of the pharynx.  
    Expr12863 The C. elegans N2 strain was also examined for the expression of DPY-31 following immunolocalisation with a C. elegans affinity purified anti-DPY- 31 peptide antibody. As for the transgenic reporter fusion (Expr12862), the expression of CeDPY-31 was primarily located in the gut cells, but was also found in the excretory duct of the excretory system.  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region