WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00230136 Gene Name  Bma-cku-70
Sequence Name  ? Bm9875 Organism  Brugia malayi
Automated Description  Predicted to enable DNA helicase activity; damaged DNA binding activity; and telomeric DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining and telomere maintenance. Predicted to be located in nucleus. Predicted to be part of Ku70:Ku80 complex. Is an ortholog of C. elegans cku-70. In C. elegans, cku-70 is involved in DNA repair. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm9875b.1 Bm9875b.1   [unknown]
Transcript:Bm9875a.1 Bm9875a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm9875b Bm9875b   [unknown]
CDS:Bm9875a Bm9875a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F30
  Time-course transcript abundance profiles. P116, k-means clusters of Brugia malayi during development in Aedes aegypti LVP between day 1 and 8 post infection; H114, k-means clusters of Ae. aegypti LVP infected with B. malayi between day 0 and 8 post infection; and HR14, host response profile comparing infected vs. uninfected A. aegypti LVP. Non-flat profiles (p < 0.01 and maximum fold-difference among time points > 2) were grouped into common temporal patterns using k-means clustering. WBPaper00045439:BM_Cluster_P9

0 Expression Patterns

8 GO Annotation

Annotation Extension Qualifier
  part_of
  located_in
  enables
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  part_of
  located_in
  enables
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region