WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00256794 Gene Name  SRAE_1000020000
Sequence Name  ? SRAE_1000020000 Organism  Strongyloides ratti
Automated Description  Predicted to enable dTDP-4-dehydrorhamnose 3,5-epimerase activity. Is an ortholog of C. elegans rml-3. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_1000020000.1 SRAE_1000020000.1   [unknown]
 

Other

0 CDSs

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Proteins that showed significantly decreased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage. Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05. WBPaper00050919:down_parasitic_vs_free-living_protein

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region