WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00284849 Gene Name  C03A3.9
Sequence Name  ? C03A3.9 Organism  Caenorhabditis elegans
Automated Description  Predicted to be located in membrane. Biotype  SO:0001217
Genetic Position  X:± Length (nt)  ? 288
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00284849

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C03A3.9.1 C03A3.9.1 288   X: 11267011-11267298
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C03A3.9 C03A3.9 288   X: 11267011-11267298

1 RNAi Result

WormBase ID
WBRNAi00039470

9 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk951917
WBVar00067835
gk417729
gk293806

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00284849 11267011 11267298 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_11267299..11267320   22 X: 11267299-11267320 Caenorhabditis elegans

11 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_upregulated
  Transcripts that showed significantly increased expression in nhr-8(hd117) comparing to in N2. Differentially expressed genes were identified using Sleuth (version 0.30.0). WBPaper00062446:nhr-8(hd117)_upregulated
  Transcripts that showed significantly increased expression in hsf-1(RNAi) comparing to in wild type animals injected with vector. Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. WBPaper00066232:hsf-1(RNAi)_upregulated_WT
  Transcripts that showed significantly decreased expression in eat-2(ad1113) comparing to in N2. DESeq2. The genes with a fold change >= 2 and a false discovery rate (FDR) < 0.05 in a comparison were identified as significant DEGs. WBPaper00065746:eat-2(ad1113)_downregulated
  Transcripts that showed significantly decreased expression in scc-1(ubs19) comparing to in control animals. DESeq2 v.1.34, fold change > 2, FDR < 0.05. WBPaper00067078:scc-1(ubs19)_downregulated
  Transcripts that showed significantly decreased expression in vha-12(ok281) comparing to in N2 at L4 larva stage. Fold change > 2, FDR < 0.01 WBPaper00066743:vha-12(ok281)_downregulated
  Single-cell RNA-Seq cell group 20_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:20_1
  Single-cell RNA-Seq cell group 80_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:80_0
  Transcripts that showed significantly decreased expression in scc-1(ubs19);coh-1(ubs26) comparing to in control animals. DESeq2 v.1.34, fold change > 2, FDR < 0.05. WBPaper00067078:scc-1(ubs19);coh-1(ubs26)_downregulated
  Single-cell RNA-Seq cell group 128_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:128_0
  Single-cell RNA-Seq cell group 20_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:20_0

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00284849 11267011 11267298 1

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

1 Sequence

Length
288

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_11266325..11267010   686 X: 11266325-11267010 Caenorhabditis elegans