WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00302998 Gene Name  F53G2.12
Sequence Name  ? F53G2.12 Organism  Caenorhabditis elegans
Automated Description  Predicted to be involved in iron-sulfur cluster assembly. Predicted to be located in mitochondrion. Predicted to be part of L-cysteine desulfurase complex. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Is an ortholog of human LYRM4 (LYR motif containing 4). Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 1913
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00302998

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F53G2.12a.1 F53G2.12a.1 606   II: 2477178-2479090
Transcript:F53G2.12c.1 F53G2.12c.1 90   II: 2478675-2478764
Transcript:F53G2.12b.1 F53G2.12b.1 39   II: 2479012-2479050
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G2.12c F53G2.12c 90   II: 2478675-2478764
CDS:F53G2.12a F53G2.12a 273   II: 2478321-2478328
CDS:F53G2.12b F53G2.12b 39   II: 2479012-2479050

5 RNAi Result

WormBase ID
WBRNAi00094760
WBRNAi00048180
WBRNAi00007353
WBRNAi00032716
WBRNAi00076468

94 Allele

Public Name
WBVar02124326
gk964317
gk963801
WBVar01546428
WBVar01546429
WBVar01546430
WBVar01546431
WBVar01546432
WBVar01546433
WBVar01546434
WBVar01546435
WBVar01546436
gk136145
gk136146
gk136147
gk136148
gk136149
WBVar02028878
WBVar01764654
WBVar01502869
WBVar01502868
WBVar01502870
WBVar00100450
WBVar00100451
WBVar00100452
WBVar00100449
WBVar00100453
WBVar00100454
WBVar00214361
WBVar00214363

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00302998 2477178 2479090 -1

4 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  
Panther orthologue and paralogue predictions  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Proteins interacting with NHR-49-GFP according to co-IP and LC-MS. N.A. WBPaper00064071:NHR-49_interacting
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Transcripts that showed significantly decreased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_downregulated
  Transcripts that showed significantly decreased expression in spr-5(by101) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101)_downregulated

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

6 Homologues

Type
least diverged orthologue
least diverged orthologue
least diverged orthologue
least diverged orthologue
least diverged orthologue
least diverged orthologue

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00302998 2477178 2479090 -1

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

1 Sequence

Length
1913

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_2479091..2480398   1308 II: 2479091-2480398 Caenorhabditis elegans