WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00304775 Gene Name  Y38E10A.34
Sequence Name  ? Y38E10A.34 Organism  Caenorhabditis elegans
Automated Description  Predicted to be located in membrane. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 830
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00304775

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y38E10A.34.1 Y38E10A.34.1 778   II: 12631188-12632017
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38E10A.34 Y38E10A.34 756   II: 12631188-12631493

0 RNAi Result

39 Allele

Public Name
gk963801
gk963053
gk962684
gk964116
gk964188
WBVar01692080
gk964189
gk963322
WBVar01547587
h17399
WBVar01936234
WBVar01505280
WBVar01505279
WBVar01505278
WBVar01505277
WBVar01505276
WBVar00106281
WBVar01559738
WBVar01559739
WBVar00001268
WBVar00001263
WBVar01248336
WBVar01248340
WBVar01248337
WBVar01248338
WBVar01248341
WBVar01248342
WBVar01912186
gk942492
WBVar00230485

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00304775 12631188 12632017 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12632018..12632580   563 II: 12632018-12632580 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171. edgeR, p-value < 0.05, fold change > 2. WBPaper00061699:daf-18(ok480)_downregulated
Fed by 25 mg/ml pRJ-Fr.5 (Protease-treated Royal Jelly) for 24 h beginning at the L4 stage. Genes up regulated after fed by 25 mg/ml pRJ-Fr.5 for 24 h beginning at the L4 stage. To identify differentially regulated genes, authors eliminated all probes with absent or marginal flags and then performed a t-test with the significance level set at p < 0.05. WBPaper00040116:pRJ-FR.5_up_regulated

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00304775 12631188 12632017 1

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

1 Sequence

Length
830

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12630631..12631187   557 II: 12630631-12631187 Caenorhabditis elegans