Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F36H5.18.1 | F36H5.18.1 |
717
 |
II: 1759902-1760667 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F36H5.18 | F36H5.18 |
717
|
II: 1759902-1760294 |
76 Allele
| Public Name |
|---|
| WBVar02124326 |
| WBVar02123182 |
| WBVar02121537 |
| gk964317 |
| gk963801 |
| WBVar02122524 |
| WBVar02120604 |
| WBVar02121124 |
| WBVar02124543 |
| WBVar02120776 |
| WBVar02121946 |
| WBVar02122773 |
| WBVar02123007 |
| WBVar02122097 |
| WBVar02122433 |
| WBVar00091181 |
| gk962685 |
| WBVar01763132 |
| WBVar01763131 |
| ttTi4200 |
| gk797981 |
| gk572561 |
| gk437846 |
| gk498471 |
| gk706926 |
| gk770397 |
| gk884748 |
| gk832682 |
| WBVar00041721 |
| WBVar00041726 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00305113 | 1759902 | 1760667 | 1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_1760668..1761863 | 1196 | II: 1760668-1761863 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes with expression level regulated by genotype (N2 vs CB4856) at L3 larva and Late reproduction stage (96 hours at 24 centigrade). | For model 2, authors used 100 permutations to estimate the FDR threshold. Per permutation, genotypes and ages were independently randomly distributed, keeping the among-gene structure intact. Then for each spot (23,232) on the array, model 2 was tested. The obtained P-values were used to estimate a threshold for each of the explanatory factors. Authors also used a genome-wide threshold of -log10 P-value = 2, which resembles an FDR of 0.072 and 0.060 for marker and the interaction age-marker for the developing worms and FDR of 0.050 and 0.065 for marker and age-marker for the aging worms. For the physiological age effect, authors used a log10 P-value = 8 in developing worms (0.012 FDR) and -log10 P-value = 6 (0.032 FDR). | WBPaper00040858:eQTL_regulated_developing | |
| heat-shock hlh-1 | Genes enriched in HLH-1 heat shock dataset. | A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. | WBPaper00031003:hlh_1_enriched |
| Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals. | Fold change > 4, p-value < 0.01 | WBPaper00056330:mrps-5(RNAi)_downregulated |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_1759453..1759901 | 449 | II: 1759453-1759901 | Caenorhabditis elegans |
