WormMine: Gene WBGene00006967

• WormBase Gene ID: WBGene00006967
• Gene Name: yrn-1
• Sequence Name: F55G1.16
• Brief Description: yrn-1 encodes an RNA with structural similarity to the vertebrate Y RNAs; yrn-1 is bound by the C. elegans Ro protein, ROP-1; it is also bound by the human Ro protein; the nematode ribonucleoprotein (RNP) complex is formed by the assembly of ROP-1 and yrn-1; RNA interference of yrn-1 does not produce any detectable phenotype, however CeY RNA levels are decreased in rop-1 mutants, indicating that Ro60 is required for Y RNA stability; the levels of CeY RNA are high in the embryo compared to other life stages.
• Organism: Caenorhabditis elegans
• Automated Description: Part of ribonucleoprotein complex.
• Biotype: SO:0001266
• Genetic Position: IV :3.33967 ±0.000229
• Length (nt): 105

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00006967

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F55G1.16	F55G1.16	105	IV: 7499508-7499612

Other

0 CDSs

1 RNAi Result

• WBRNAi00032896

10 Allele

• gk964278
• gk964500
• gk963722
• gk963417
• gk963416
• tm11199
• gk393400
• tm2634
• gk527769
• gk464811

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00006967
• Start: 7499508
• End: 7499612
• Strand: 1

3 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer6)_upregulated
	Transcripts that showed significantly increased expression in elli-1(sam-3) comparing to in N2 animals, accordingto tiling array analysis.	Fold change > 1.2, q-value < 0.05.	WBPaper00050743:elli-1(sam-3)_downregulated
	Transcripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer39)_upregulated
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_normal
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_UV

0 Expression Patterns

1 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00006967
• Start: 7499508
• End: 7499612
• Strand: 1

1 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 105

1 Sequence Ontology Term