WormMine: Gene WBGene00109902

• WormBase Gene ID: WBGene00109902
• Gene Name: PPA20348
• Sequence Name: PPA20348
• Organism: Pristionchus pacificus
• Automated Description: Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in protein autoprocessing and regulation of DNA-templated transcription. Is an ortholog of C. elegans myrf-1 and myrf-2. In C. elegans, myrf-1 is involved in ecdysis, collagen and cuticulin-based cuticle and nematode larval development.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Pristionchus pacificus
• Taxon Id: 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:PPA20348.1	PPA20348.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:PPA20348	PPA20348		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides.	The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid).	WBPaper00041472:Phosphorylated_protein
	P.pacificus genes enriched in intestine.	Cuffdiff (version v2.0.1)	WBPaper00049334:PE_intestine_enriched
Yeast culture: C.curvatus	Transcripts that showed significantly decreased expression after fed with yeast culture C.curvatus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.curvatus_vs_OP50_downregulated
	Transcripts that showed significantly decreased expression in Ppa-sul-2(tu1069) animals comparing to in wild type PS312 animals at J4.12 stage.	DESeq244(version 1.18.1) with two criteria, P-value < 0.05 and Fold change > 2.	WBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Down
Yeast culture: C.albidus	Transcripts that showed significantly increased expression after fed with yeast culture C.albidus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.albidus_vs_OP50_upregulated
Yeast culture: C.albidus	Transcripts that showed significantly decreased expression after fed with yeast culture C.albidus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.albidus_vs_OP50_downregulated
Yeast culture: C.curvatus	Transcripts that showed significantly increased expression after fed with yeast culture C.curvatus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.curvatus_vs_OP50_upregulated

0 Expression Patterns

4 GO Annotation

0 Homologues

0 Locations

4 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term