Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y26G10.5.1 | Y26G10.5.1 |
237
 |
V: 17700419-17700828 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y26G10.5 | Y26G10.5 |
174
|
V: 17700436-17700592 |
17 Allele
| Public Name |
|---|
| gk963271 |
| gk963489 |
| gk963304 |
| gk963637 |
| gk964050 |
| gk962704 |
| gk962630 |
| WBVar01692869 |
| WBVar01653878 |
| tm11194 |
| gk260850 |
| gk260851 |
| WBVar00050860 |
| WBVar00050850 |
| WBVar00050855 |
| gk658172 |
| gk488329 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00189930 | 17700419 | 17700828 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_17700408..17700418 | 11 | V: 17700408-17700418 | Caenorhabditis elegans |
8 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. | Log2 Fold change > 2 or <-1, p-value < 0.05. | WBPaper00053599:female_vs_male_downregulated | |
| Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066594:ilc-17.1(syb5296)_upregulated | |
| Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. | N.A. | WBPaper00026929:Resveratrol_regulated_daf-16 | |
| Genes found to be regulated in N2 by resveratrol treatment with p < 0.01. | N.A. | WBPaper00026929:Resveratrol_regulated_N2 | |
| siRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine). | DESeq2 v1.13.8, fold change > 2, FDR < 0.01. | WBPaper00056161:male_enriched_siRNA | |
| Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_13 | |
| The cluster contains genes that showed expression changes in the let-60(G12V) time course that were different than those in the wild-type time course. | A mixed procedure analysis of variation (ANOVA) was used to identify genes with significantly different expression levels (P < 0.001). | [cgc5376]:let-60(G12V)-regulated_genes | |
| Genes with more than 2 fold decrease of expression after 500 mg/l acrylamide treatment comparing with control. | Two-sided t-test, p < 0.005. | WBPaper00031184:acrylamide_downregulated |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1159281 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 | |||
| Expr1018384 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |