WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235016 Gene Name  Bma-dhps-1
Sequence Name  ? Bm14681 Organism  Brugia malayi
Automated Description  Is affected by 20-hydroxyecdysone based on RNA-seq studies. Is predicted to encode a protein with the following domains: DHS-like NAD/FAD-binding domain superfamily; Deoxyhypusine synthase; and Deoxyhypusine synthase superfamily. Is an ortholog of C. elegans dhps-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm14681c.1 Bm14681c.1   [unknown]
Transcript:Bm14681b.1 Bm14681b.1   [unknown]
Transcript:Bm14681a.1 Bm14681a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm14681a Bm14681a   [unknown]
CDS:Bm14681b Bm14681b   [unknown]
CDS:Bm14681c Bm14681c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

9 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly lower expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Downregulated
  Proteins secreted by B.malayi at L3 larva stage, according to LC-MS-MS. N.A. WBPaper00050454:Secretome_protein
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F30
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 42 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F42
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_F120
  Transcripts that showed significantly increased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M30_vs_L4
  Transcripts that showed significantly lower expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Downregulated
  Transcripts that showed significantly decreased expression in female B. malayi 30 days after infecting gerbils, comparing to L4 female B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F30_vs_L4
  Transcripts that showed significantly increased expression in parasites exposed to 20-hydroxyecdysone. edgeR was used to analyze the data using the counts generated for the four samples with Cuffdiff. WBPaper00049261:20-hydroxyecdysone_upregulated_RNAseq

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term