Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C37C3.18a.1 | C37C3.18a.1 |
333
 |
V: 7854993-7856015 |
| Transcript:C37C3.18b.1 | C37C3.18b.1 |
383
|
V: 7854993-7856055 |
Other
2 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:C37C3.18a | C37C3.18a |
255
|
V: 7855052-7855115 |
| CDS:C37C3.18b | C37C3.18b |
234
|
V: 7855052-7855115 |
20 Allele
| Public Name |
|---|
| gk963301 |
| gk963553 |
| gk964259 |
| gk964351 |
| gk963850 |
| gk962860 |
| gk240229 |
| gk240230 |
| gk240231 |
| gk240232 |
| gk240233 |
| gk240234 |
| ttTi4440 |
| WBVar00213177 |
| gk736030 |
| gk314698 |
| gk729101 |
| gk908134 |
| gk751546 |
| gk559311 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00303000 | 7854993 | 7856055 | 1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. | DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. | WBPaper00060811:L1_vs_adult_upregulated_neural | |
| Proteins interacting with NHR-49-GFP according to co-IP and LC-MS. | N.A. | WBPaper00064071:NHR-49_interacting | |
| Genes with differential expression under 0.5mg/l Diazinon (DZN) treatment at 24 centigrade. | To identify the differentially expressed genes in each treatment authors used linear models per toxicant and temperature (gene expression = Toxicant (effect) + error). The lm function in R stats package was used to implement the linear models analysis with recommended default options. For threshold determination authors used a permutation approach. For each of the 23,232 permutations used authors randomly picked a transcript (array spot), which could only be picked once. Authors combined all the expression values of this transcript and randomly distributed them over the replicates and used them in the linear model. In this way authors obtained a threshold for each of the toxicants. Authors used a -log10 p-value 2 as common threshold for the analysis, which resembles to the following FDR per toxicant: 0.0155 for CPF at 24 centigrade, 0.0148 for DZN at 24 centigrade, 0.0168 for CPF+DZN at 24 centigrade, 0.0142 for CPF at 16 centigrade, 0.0151 for DZN at 16 centigrade, and 0.0148 for CPF+DZN, at 16 centigrade. | WBPaper00040210:Diazinon_24C_regulated | |
| Proteins that interact with HMG-3-HA in BAT1753 [hmg-3(bar24[hmg-3-3xHA]) I] at L4 larva stage according to Co-Immunoprecipitation with subsequent Mass Spectrometry analysis. | N.A. | WBPaper00055013:HMG-3_interacting_protein |